You can easily select which Price List or Stock Location you would like your store to sync with. Here's how.
Navigate to the Settings Page of your Woocommerce integration.
If you scroll past the Channel name you will see fields for Price Lists as well as Stock Locations.
You can select the Price List you want your products to sync with, and click on Resync Products.
You can also select the warehouse to which you would like to sync your store's inventory level. Then click on Resync Products.
You products will be resync-ed accordingly!